gRNAde
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Geometric Deep Learning for 3D RNA Inverse Design (ICLR 2025 Spotlight): a multi-state GNN with autoregressive decoding for structure-conditioned RNA design. It matched human experts on blinded Eterna (95% vs 70% for prior automated methods), has ~309 GitHub stars, and spawned RNA-FrameFlow. Cambridge-led (Joshi, Liò senior).
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Architecture DENSE